[BioC] org.Hs.eg.db

[James W. MacDonald]

Hi Uwe,

Uwe Ligges wrote:
> Hi,
> 
> loading package "org.Hs.eg.db" fails for me these days, see below for 
> details. I guess this is related to the recent "AnnotationDbi" update on 
> BioC and this is the package's maintainer address I found ...

What version of org.Hs.eg.db do you have? This isn't a problem for me.

 > library(org.Hs.eg.db)
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

   Vignettes contain introductory material. To view, type
   'openVignette()'. To cite Bioconductor, see
   'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
 > sessionInfo()
R version 2.11.0 Patched (2010-05-01 r51890)
i386-pc-mingw32

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base

other attached packages:
[1] org.Hs.eg.db_2.4.1   RSQLite_0.9-0        DBI_0.2-5
[4] AnnotationDbi_1.10.1 Biobase_2.8.0

loaded via a namespace (and not attached):
[1] tools_2.11.0

Best,

Jim


> 
> Best wishes,
> Uwe
> 
> 
> 
> 
>  > library("org.Hs.eg.db")
> Error in stop(msg, " ", errors, domain = NA) :
>   no function to return from, jumping to top level
> Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
>   call: is(object, Cl)
>   error: error in evaluating the argument 'drv' in selecting a method 
> for function 'dbConnect'
> Error: package/namespace load failed for 'org.Hs.eg.db'
> 
> 
>  > sessionInfo()
> R version 2.11.0 (2010-04-22)
> i386-pc-mingw32
> 
> locale:
> [1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252 
> LC_MONETARY=German_Germany.1252
> [4] LC_NUMERIC=C                    LC_TIME=German_Germany.1252
> 
> attached base packages:
> [1] stats     graphics  grDevices datasets  utils     methods   base
> 
> other attached packages:
> [1] RSQLite_0.9-0        DBI_0.2-5            AnnotationDbi_1.10.1 
> Biobase_2.8.0
> [5] lattice_0.18-5       fortunes_1.3-7
> 
> loaded via a namespace (and not attached):
> [1] grid_2.11.0
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826
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