[BioC] help - where to start

Martin Morgan mtmorgan at fhcrc.org
Wed Oct 6 05:46:20 CEST 2010

On 10/05/2010 03:07 PM, Adrian Johnson wrote:
> Hello group,
> I just have my fastq files from a sequencing group. what kind of
> diagnostics one can do using bioconductor? I have a slight idea about
> ngs but do not know where to start?
> What kind of quality assessment tools can be applied on fastq files to
> find if the quality of the reads are good.
> Sorry for a very naive question, just taking baby steps.

There's a brief overview at


Also the updated biocViews widget at


e.g., Software / AssayTechnologies / HighThroughputSequencing


> thanks
> Ad
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