[BioC] Quality control on Human Affymetrix Exon microarrays
cstrato
cstrato at aon.at
Fri Sep 10 22:37:05 CEST 2010
Dear Branko,
Since I develop xps completely in my spare free time some tings take
longer as expected. I have already implemented initial versions of NUSE
plots and RLE plots, which are already available in xps, and I am still
aiming to implement residual-images and affyplm, but this turns out to
be not as simple as I thought.
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
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On 9/10/10 3:18 PM, B.Misovic at lumc.nl wrote:
>
> Hi Daniel,
>
> First to thank all Bioc people for making/supporting/advising great libraries.
>
> I also use Xps and I remember Christian (the author) said to me once that he is aiming to add/implement affyplm . In the mean time I used Aroma package (which is out of BioC) since they tweaked affyplm and this R tool can also work on "standard" desktop PC.
>
> The probeLm residual figures showed ( for our assay with Human Exon 1.0 ST Array), some chips with hybridization artifacts... so we informed the company doing the hybridization and they were willing to re-hybridize the chips.
>
> Best,
> Branko
>
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