[BioC] Quality control on Human Affymetrix Exon microarrays

[B.Misovic at lumc.nl]

Hi Daniel,
 
   First to thank all Bioc people for making/supporting/advising great libraries.

   I also use Xps and  I remember Christian (the author) said to me once that he is aiming to add/implement affyplm .  In the mean time I used Aroma package (which is out of BioC) since  they tweaked affyplm and this  R tool  can also work on  "standard" desktop  PC.
 
 The probeLm residual figures showed ( for our assay with Human Exon 1.0 ST Array), some chips with hybridization artifacts... so we informed the company doing the hybridization and they were willing to re-hybridize the chips.

Best,
Branko