[BioC] pdf report in ShortRead

Kavita Garg [guest] guest at bioconductor.org
Fri Dec 30 00:01:16 CET 2011


Is there a way to print the report in pdf format ? I tried the following and got an error.

thanks
kavita

>class(qa)
[1] "ShortReadQQA"
attr(,"package")
[1] "ShortRead"

>rpt <- report(qa,dest = "REPORT.pdf", type = "pdf")

Error: UserArgumentMismatch
  'report, type="pdf"' not implemented for class 'ShortReadQQA'


 -- output of sessionInfo(): 

R version 2.13.2 (2011-09-30)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ShortRead_1.10.4    Rsamtools_1.4.3     lattice_0.19-33    
[4] Biostrings_2.20.4   GenomicRanges_1.4.6 IRanges_1.10.4     

loaded via a namespace (and not attached):
[1] Biobase_2.12.2  grid_2.13.2     hwriter_1.3     multicore_0.1-7

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