[BioC] Can not install Ruuid package in a linux server

[Vincent Carey]

get a sysadmin to do something like

sudo yum install glib

and try again

you are missing basic development infrastructure on your linux machine

On Mon, Feb 7, 2011 at 2:59 AM, Mao Jianfeng <jianfeng.mao at gmail.com> wrote:
> Dear listers,
>
> I am facing problem of installing Ruuid package in a linux server.
> Please give some helps.
>
> Thanks in advance.
>
> Jian-Feng,
>
>
> #################(1) install Ruuid package from
> binary###########################################
>> source("http://bioconductor.org/biocLite.R")
> BioC_mirror = http://www.bioconductor.org
> Change using chooseBioCmirror().
>> biocLite('Ruuid')
> Using R version 2.12.0, biocinstall version 2.7.4.
> Installing Bioconductor version 2.7 packages:
> [1] "Ruuid"
> Please wait...
>
> Installing package(s) into ‘/ebio/abt6/jmao/rpacks’
> (as ‘lib’ is unspecified)
> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/Ruuid_1.28.0.tar.gz'
> Content type 'application/x-gzip' length 71906 bytes (70 Kb)
> opened URL
> ==================================================
> downloaded 70 Kb
>
> * installing *source* package ‘Ruuid’ ...
> checking for pkg-config... /usr/bin/pkg-config
> checking for glib-config... no
> checking for glib-2.0... configure: error: No glib package information found
> ERROR: configuration failed for package ‘Ruuid’
> * removing ‘/ebio/abt6/jmao/rpacks/Ruuid’
>
> The downloaded packages are in
>        ‘/tmp/RtmpGQAHn2/downloaded_packages’
> Warning message:
> In install.packages(pkgs = pkgs, repos = repos, ...) :
>  installation of package 'Ruuid' had non-zero exit status
>> library(Ruuid)
> Error in library(Ruuid) : there is no package called 'Ruuid'
>
> #####################(2) install Ruuid package from
> source#######################################
>> biocLite("Ruuid", type="source")
> Using R version 2.12.0, biocinstall version 2.7.4.
> Installing Bioconductor version 2.7 packages:
> [1] "Ruuid"
> Please wait...
>
> Installing package(s) into ‘/ebio/abt6/jmao/rpacks’
> (as ‘lib’ is unspecified)
> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/Ruuid_1.28.0.tar.gz'
> Content type 'application/x-gzip' length 71906 bytes (70 Kb)
> opened URL
> ==================================================
> downloaded 70 Kb
>
> * installing *source* package ‘Ruuid’ ...
> checking for pkg-config... /usr/bin/pkg-config
> checking for glib-config... no
> checking for glib-2.0... configure: error: No glib package information found
> ERROR: configuration failed for package ‘Ruuid’
> * removing ‘/ebio/abt6/jmao/rpacks/Ruuid’
>
> The downloaded packages are in
>        ‘/tmp/RtmpGQAHn2/downloaded_packages’
> Warning message:
> In install.packages(pkgs = pkgs, repos = repos, ...) :
>  installation of package 'Ruuid' had non-zero exit status
>
>
>
> #######################(1) my version and
> sessionInfo()#####################################
>> version
>               _
> platform       x86_64-unknown-linux-gnu
> arch           x86_64
> os             linux-gnu
> system         x86_64, linux-gnu
> status
> major          2
> minor          12.0
> year           2010
> month          10
> day            15
> svn rev        53317
> language       R
> version.string R version 2.12.0 (2010-10-15)
>> sessionInfo()
> R version 2.12.0 (2010-10-15)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>  [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_2.12.0
>
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