[BioC] BLAST in R

Hervé Pagès hpages at fhcrc.org
Wed Jun 8 22:13:44 CEST 2011

Hi Zoha,

On 11-06-06 07:49 AM, Zoha Moztarzadeh wrote:
> Hello bioconductor group,
> I have a FASTA sequences (without ID) and would like to find the homolge sequneces with BLAST.
> How can I do this in R explain me haw to do multiple sequence alignment with them.

The only thing I'm aware of is the blastSequences() function in the
annotate package. I've never used this function.


> Thanks in advance,
> Zoha
> 	[[alternative HTML version deleted]]
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Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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