[BioC] Working with Agilent 4X44k array,two color experiment

Sean Davis sdavis2 at mail.nih.gov
Tue Jun 21 12:37:39 CEST 2011

On Tue, Jun 21, 2011 at 6:28 AM, Srikanth Manda Srinivas
<srikanth at ibioinformatics.org> wrote:
> Hi Everyone,
> I would like to know if we have specific package to work with Agilent 4X44k
> array just like Affy. Please guide me how one go for generating HeatMaps and
> other analysis on this data. I am a newbie in this area.

Take a look at the Agi4x44Preprocess package.  If you are new to
microarray data analysis using bioconductor, take a look at the limma
package and its documentation, particularly the user guide.


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