[BioC] Working with Agilent 4X44k array,two color experiment

Yong Li yong.li at zbsa.uni-freiburg.de
Tue Jun 21 15:25:04 CEST 2011

Hello Sean,

the the Agi4x44Preprocess package is only for one color Agilent arrays. 
I also think the limma package is the right choice as it should do the 
job for two color Agilent arrays.

Best regards,

Sean Davis wrote:
> On Tue, Jun 21, 2011 at 6:28 AM, Srikanth Manda Srinivas
> <srikanth at ibioinformatics.org> wrote:
>> Hi Everyone,
>> I would like to know if we have specific package to work with Agilent 4X44k
>> array just like Affy. Please guide me how one go for generating HeatMaps and
>> other analysis on this data. I am a newbie in this area.
> Take a look at the Agi4x44Preprocess package.  If you are new to
> microarray data analysis using bioconductor, take a look at the limma
> package and its documentation, particularly the user guide.
> Sean
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