[BioC] gammaFitEM()

Richard C. McEachin mceachin at umich.edu
Wed May 11 19:06:33 CEST 2011


Hello All,

I'd like to use gammaFitEM(), methylationCall(), and lumiMethyStatus  
in the lumi package to distinguish methylated versus unmethylated  
sites on the IlluminaHumanMethylation27k chip.  I find these functions  
in "Analyze Illumina Infinium methylation microarray data", but  
nowhere else.

Session info et al., below.  Any help?

Thanks, Rich McEachin

-------------------------------
> ??gammaFitEM
No help files found with alias or concept or title matching
‘gammaFitEM’ using fuzzy matching.

> sessionInfo()
R version 2.12.2 (2011-02-25)
Platform: x86_64-pc-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] lumi_2.2.1     Biobase_2.10.0

loaded via a namespace (and not attached):
  [1] affy_1.28.1           affyio_1.18.0         annotate_1.28.1
  [4] AnnotationDbi_1.12.1  DBI_0.2-5             grid_2.12.2
  [7] hdrcde_2.15           KernSmooth_2.23-4     lattice_0.19-17
[10] MASS_7.3-11           Matrix_0.999375-46    methylumi_1.6.1
[13] mgcv_1.7-3            nlme_3.1-98           preprocessCore_1.12.0
[16] RSQLite_0.9-4         tools_2.12.2          xtable_1.5-6



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