[BioC] Error loading ShortRead

rcaloger raffaele.calogero at unito.it
Mon May 16 15:50:02 CEST 2011


Dear All,
I am trying to load ShortRead package but I get the following error:

library(Biostrings)
library(ShortRead)
Error : object ‘compact’ is not exported by 'namespace:Biostrings'
Error: loading package/namespace failed for 'ShortRead'

Any suggestions?
Cheers
Raffaele

##########################################################
sessionInfo()

R version 2.13.0 (2011-04-13)
Platform: x86_64-pc-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Italian_Italy.1252 LC_CTYPE=Italian_Italy.1252 
LC_MONETARY=Italian_Italy.1252
[4] LC_NUMERIC=C LC_TIME=Italian_Italy.1252

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] Rsamtools_1.4.0 Biostrings_2.20.1 GenomicRanges_1.4.3 IRanges_1.10.3 
lattice_0.19-23

loaded via a namespace (and not attached):
[1] Biobase_2.12.1 grid_2.13.0 tools_2.13.0


-- 

----------------------------------------
Prof. Raffaele A. Calogero
Bioinformatics and Genomics Unit
MBC Centro di Biotecnologie Molecolari
Via Nizza 52, Torino 10126
tel.   ++39 0116706457
Fax    ++39 0116706487
Mobile ++39 3333827080
email: raffaele.calogero at unito.it
        raffaele[dot]calogero[at]gmail[dot]com
www:   http://www.bioinformatica.unito.it



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