[BioC] installation of bioconductopr packages fails
Kasper Daniel Hansen
kasperdanielhansen at gmail.com
Mon Nov 28 22:11:31 CET 2011
Most likely you have saved versions of biocLite in your workspace.
Remove those and re-do.
On Mon, Nov 28, 2011 at 4:02 PM, Ina Hoeschele <inah at vbi.vt.edu> wrote:
> I cannot install any bioconductor packages right now - sorry but can someone tell me what is wrong? Please see below.
> Thanks, Ina
> Using R version 2.14.0, biocinstall version 2.8.4.
> Installing Bioconductor version 2.8 packages:
>  "limma"
> Please wait...
> Warning: unable to access index for repository http://bioconductor.org/packages/2.8/bioc/bin/windows/contrib/2.14
> Warning: unable to access index for repository http://bioconductor.org/packages/2.8/data/annotation/bin/windows/contrib/2.14
> Warning: unable to access index for repository http://bioconductor.org/packages/2.8/data/experiment/bin/windows/contrib/2.14
> Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.14
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
> package ‘limma’ is not available (for R version 2.14.0)
> R version 2.14.0 (2011-10-31)
> Platform: i386-pc-mingw32/i386 (32-bit)
>  LC_COLLATE=English_United States.1252
>  LC_CTYPE=English_United States.1252
>  LC_MONETARY=English_United States.1252
>  LC_NUMERIC=C
>  LC_TIME=English_United States.1252
> attached base packages:
>  stats graphics grDevices utils datasets methods base
> other attached packages:
>  BiocInstaller_1.2.1
> loaded via a namespace (and not attached):
>  tools_2.14.0
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