[BioC] Identifying the genome sequence of an affy probe

Steve Lianoglou mailinglist.honeypot at gmail.com
Thu Oct 27 18:01:55 CEST 2011


Hi,

On Thu, Oct 27, 2011 at 11:54 AM, Schragi Schwartz
<schwartz at broadinstitute.org> wrote:
> Hi,
>
> I'm looking for a package that will give me the sequence of affy
> probes in the Human U133A 2.0 package. In other words, I have a list
> of affy ids (e.g. 237488_s_at, etc.) and I would like to know the
> sequences of original 25 mers this probe corresponds to.

Try:

http://www.bioconductor.org/packages/release/data/annotation/html/hgu133a2probe.html

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact



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