[BioC] overview function of made4

[Aedin]

That should be an easy fix. But I will have to check the code, it's a long time since I wrote it. But overview is a really simple wrapper function that plots a dendrogram, boxplot and histogram. I an traveling currently. I will look at this ASAP
Aedin


---

On Jul 3, 2012, at 16:39, Martin Morgan <mtmorgan at fhcrc.org> wrote:

> On 07/02/2012 08:30 AM, Anja Rockstroh wrote:
>> Hello Aedin,
>> 
>> I noticed that the default colours the overview function of the made4
>> package is using is the 21 colour palette of getcol. However, I was
>> wondering whether this can be changed to custom colours? I have tried
>> to include arraycol or cols into the overview function, but I always
>> get the "unused arguments" error message. I am sorry if this is a
>> stupid question, I am still very new to R and it might just be a
>> typing error on my side. Could you please give me an example command
>> line?
> 
> Usually best to cc the packageDescription("made4")$Maintainer in posts, as they are in the best position to help. From looking at the code and man page I would guess that it hasn't been written to support choice of colors that deviate from the maintainer's favorites.
> 
> Martin
> 
> 
>> 
>> Thanks very much in advance for your help, it is much appreciated.
>> 
>> Best regards, Anja
>> 
>> Anja Rockstroh | Research Fellow | Australian Prostate Cancer
>> Research Centre - Queensland | Institute of Health and Biomedical
>> Innovation | Queensland University of Technology / QUT | Office:
>> Level 1 Building 33 | Lab: Level 2 R-wing |Princess Alexandra
>> Hospital | 199 Ipswich Rd | Brisbane QLD 4102 Australia | Lab phone:
>> 07 3176 5491 | Office phone: 07 3176 3074 | fax: 07 3176 7440 |
>> email: anja.rockstroh at qut.edu.au
>> 
>> 
>> [[alternative HTML version deleted]]
>> 
>> _______________________________________________ Bioconductor mailing
>> list Bioconductor at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/bioconductor Search the
>> archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
> 
> 
> -- 
> Computational Biology / Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N.
> PO Box 19024 Seattle, WA 98109
> 
> Location: Arnold Building M1 B861
> Phone: (206) 667-2793