[BioC] EBImage installation problem on Linux

Jayangshu Saha [guest] guest at bioconductor.org
Wed Jul 11 11:21:24 CEST 2012


Hi Group,

I am trying to install the EBImage package on my linux box. I have the latest version of Red Hat Linux, GTK 2.10.4 and Image magick. The error which I get is as follows...Could anyone give me an idea what I am doing wrong?
Please find the error message and session info below.

I have already read an earlier post regarding the same issue (https://stat.ethz.ch/pipermail/bioconductor/2009-July/028666.html) and seen the response but I using latest version anyway.


Thanks in advance.

Jayangshu

 -- output of sessionInfo(): 

[root at CS-ORIS-SVR09 local]# R CMD INSTALL EBImage_3.12.0.tar.gz
* installing to library â/usr/local/lib64/R/libraryâ
* installing *source* package âEBImageâ ...
checking for Magick-config... no
configure: error: "ImageMagick or ImageMagick includes not found!"
ERROR: configuration failed for package âEBImageâ
* removing â/usr/local/lib64/R/library/EBImageâ

[root at CS-ORIS-SVR09 local]# R

R version 2.15.0 (2012-03-30)
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("http://bioconductor.org/biocLite.R")
BiocInstaller version 1.4.7, ?biocLite for help
>     biocLite("EBImage")
BioC_mirror: http://bioconductor.org
Using R version 2.15, BiocInstaller version 1.4.7.
Installing package(s) 'EBImage'
trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/EBImage_3.12.0.tar.gz'
Content type 'application/x-gzip' length 4738660 bytes (4.5 Mb)
opened URL
==================================================
downloaded 4.5 Mb

* installing *source* package âEBImageâ ...
checking for Magick-config... no
configure: error: "ImageMagick or ImageMagick includes not found!"
ERROR: configuration failed for package âEBImageâ
* removing â/usr/local/lib64/R/library/EBImageâ

The downloaded source packages are in
        â/tmp/Rtmpp42hTM/downloaded_packagesâ
Updating HTML index of packages in '.Library'
Making packages.html  ... done
Old packages: 'caTools', 'gplots', 'gregmisc', 'RCurl'
Update all/some/none? [a/s/n]:

> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.4.7

loaded via a namespace (and not attached):
[1] tools_2.15.0

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