[BioC] EdgeR: about FDR

[anna [guest]]

hi again everybody,
actually log FC is not a worry because I can choose a cut-off myself ( logFC>1 for example),
the worry is more about FDR that are >0.05 in list A or B, but still the gene has FDR<0.05 in the contrast list,
so is that gene significantly differently regulated ?
thanks,
anna

 -- output of sessionInfo(): 

R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252   
[3] LC_MONETARY=French_France.1252 LC_NUMERIC=C                  
[5] LC_TIME=French_France.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base 

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