[BioC] EdgeR: about FDR

[anna [guest]]

Hello James, (Hello Gordon)

thank you very much for your help,(both of you).

I understand pretty well what you mean James,thank you.

I was just wondering how we can build certainty on 2 uncertainties.

But I check back my data , actually there was not absence of significance at the same time for both treatments,

it only happened that one of them at a time was not significantly regulating some genes(either same or opposite direction as the other treatment). So then if I assume that for those genes in that treatment logFc=0,

I still had a large enough difference between treatment A and B, which reaches significance.

Have a nice day James,

thanks again,

anna


 -- output of sessionInfo(): 

R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252   
[3] LC_MONETARY=French_France.1252 LC_NUMERIC=C                  
[5] LC_TIME=French_France.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base  

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