[BioC] Analyzing expression Affymetrix Hugene1.0.st array

Dario Strbenac D.Strbenac at garvan.org.au
Tue Oct 2 02:00:07 CEST 2012

We had the same question about these exact arrays. We chose a panel of genes to measure with qPCR and compared with the Affymetrix arrays. We found a cutoff of 6 was good for the genes that did were not detected by the end of the qPCR run. It's not a definitive answer, but reasonably useful to consider.

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