[BioC] doesn\'t appear to be a valid BAM file

Michael [guest] guest at bioconductor.org
Tue Oct 16 19:36:18 CEST 2012


First of all sorry for posting about cufflinks here...

This is what I get when trying to run cuffdiff (cufflinks 2.0) with bam from tophat 1.4.1 using command is for diff analysis without trans. discovery

'repA2.bam doesn't appear to be a valid BAM file'

cuffdiff genes.gtf rep1.bam,rep2.bam \ repA2.bam,repA2.bam

thanks in advance :)

 -- output of sessionInfo(): 


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