[BioC] A basic question about retrieve the absolute genome position from the output of of function matchPWM .

Steve Lianoglou mailinglist.honeypot at gmail.com
Sun Oct 28 05:17:43 CET 2012

Hi Holly,

On Sat, Oct 27, 2012 at 11:46 PM, Holly <xyang2 at uchicago.edu> wrote:
> Hi, Steve,
> I should pay attention to the arrows near the gene RHOA, e.g.
> chr3:49,396,579-49,449,428.
> Yes, left and right are relatively.
> "people often/occasionally/might-be-inclined-to include
> sequence up to and including the first intron of a gene when looking
> for regulatory motifs" - If you have citation for this, will be even more
> helpful.

You can start here:


HTH :-)


Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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