[BioC] which R package can be used to do all the GO analysis

[Paul Shannon]

Dear Shan Gao,

I'd be glad to try to help with this.  Could you give us a sense of the biological problem you wish to address?  Once I understand that, I can make some concrete suggestions.

Best,

 - Paul

> dear ALL:
>         If i have GO annotation file, which R package can be used
> to do all the statistics and output maps. TopGO?
> 
> The GO annotation file in such format
> UN000001	GO:0005515
> UN000001	GO:0000741
> UN000001	GO:0004252
> UN000001	GO:0004176
> UN000001	GO:0070361
> UN000001	GO:0051131
> UN000001	GO:0070407
> UN000001	GO:0009507
> UN000001	GO:0003697
> UN000001	GO:0042645
> UN000001	GO:0003727
> UN000001	GO:0005829
> UN000001	GO:0009560
> UN000001	GO:0006515
> UN000001	GO:0001666
> UN000001	GO:0007005
> UN000001	GO:0051260
> UN000001	GO:0006200
> UN000001	GO:0005524
> UN000001	GO:0034599
> UN000002	GO:0005515
> UN000002	GO:0000741
> UN000002	GO:0004252
> UN000002	GO:0004176
> UN000002	GO:0070361
> UN000002	GO:0051131
> UN000002	GO:0070407
> UN000002	GO:0009507
> UN000002	GO:0003697
> UN000002	GO:0042645
> UN000002	GO:0003727
> UN000002	GO:0005829
> UN000002	GO:0009560
> UN000002	GO:0006515
> UN000002	GO:0001666
> UN000002	GO:0007005
> UN000002	GO:0051260
> UN000002	GO:0006200
> UN000002	GO:0005524
> UN000002	GO:0034599
> UN000003	GO:0005515
> UN000003	GO:0000741
> UN000003	GO:0004252
> 
> 
> -- 
> shan gao
> Room 231(Dr.Fei lab)
> Boyce Thompson Institute
> Cornell University
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