[BioC] Annotate blastSequences Returns No Result

Dario Strbenac dstr7320 at uni.sydney.edu.au
Sun Aug 18 11:00:21 CEST 2013


The function blastSequences in the package Annotate isn't returning anything for the following example, a sequence from the beginning of GAPDH in the human genome reference sequence.


I think my issue is I don't understand the format of the database argument, because I can provide nonsense names for the database, and it doesn't give an error for those. The help file doesn't contain enough detail. Can the documentation be clarified ?

I am also interested in the argument "filter" for which there is only a blank space.

Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050

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