[BioC] Annotate blastSequences Returns No Result

Martin Morgan mtmorgan at fhcrc.org
Sun Aug 18 16:07:12 CEST 2013

On 08/18/2013 02:00 AM, Dario Strbenac wrote:
> Hello,
> The function blastSequences in the package Annotate isn't returning anything
> for the following example, a sequence from the beginning of GAPDH in the
> human genome reference sequence.
>> "nr/nt")

the database is "nr", not "nr/nt"; it seems like the code isn't checking the 
result for an error, just not finding any results.


> list()
> I think my issue is I don't understand the format of the database argument,
> because I can provide nonsense names for the database, and it doesn't give an
> error for those. The help file doesn't contain enough detail. Can the
> documentation be clarified ?
> I am also interested in the argument "filter" for which there is only a blank
> space.
> -------------------------------------- Dario Strbenac PhD Student University
> of Sydney Camperdown NSW 2050 Australia
> _______________________________________________ Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor

Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793

More information about the Bioconductor mailing list