[BioC] Gene Ontologies exploration

[Steve Lianoglou]

Hi Jose,

On Wed, Feb 6, 2013 at 1:16 PM, Jose M Garcia Manteiga
<manteiga.garcia at gmail.com> wrote:
> Dear Biocs,
> I would like to produce pie charts or similar with percentage of genes associated to selected Gene Ontologies categories (or KEGG), preferable if I can choose the categories so that I can customise them using some search by keyword option.
> I would like to do it to compare the percentage of genes expressed in two different samples for the selected categories.
> I have explored Voronto (outside Bioc) and goProfiles and GeneAnswers, but I am not sure these are the best options.

So ... what's your question? :-)

Are you curious how you might make such a pie chart?
Or, perhaps you're not sure how to find genes associated with a given
GO (or KEGG) category?

or?

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact