[BioC] org.Hs.eg.db package loading issues

[Guest [guest]]

Hi,

When I run the R code on analysis of HuGene2.0ST array, it generated an error as follows:

> source("/Users/jial2/Documents/projects/Project422/limmaAnalysis.R")
Loading required package: org.Hs.eg.db
Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
  call: get(name, envir = asNamespace(pkg), inherits = FALSE)
  error: object '.setDummyField' not found
Error: package ‘org.Hs.eg.db’ could not be loaded

Then I run the library individually, it still has the same error message.

> library(org.Hs.eg.db)
Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
  call: get(name, envir = asNamespace(pkg), inherits = FALSE)
  error: object '.setDummyField' not found
Error: package or namespace load failed for ‘org.Hs.eg.db’

Any suggestions would be highly appreciated.

Thanks,


 -- output of sessionInfo(): 

> sessionInfo()
R version 3.0.0 (2013-04-03)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] AnnotationDbi_1.22.6       limma_3.16.6               pd.hugene.2.0.st_3.8.0    
 [4] RSQLite_0.11.4             DBI_0.2-7                  oligo_1.24.1              
 [7] oligoClasses_1.22.0        affyPLM_1.36.0             preprocessCore_1.22.0     
[10] arrayQualityMetrics_3.16.0 affyQCReport_1.38.0        lattice_0.20-15           
[13] simpleaffy_2.36.1          gcrma_2.32.0               genefilter_1.42.0         
[16] affy_1.38.1                Biobase_2.20.1             BiocGenerics_0.6.0        
[19] BiocInstaller_1.10.2      

loaded via a namespace (and not attached):
 [1] affxparser_1.32.3    affyio_1.28.0        annotate_1.38.0      beadarray_2.10.0    
 [5] BeadDataPackR_1.12.0 Biostrings_2.28.0    bit_1.1-10           Cairo_1.5-2         
 [9] cluster_1.14.4       codetools_0.2-8      colorspace_1.2-2     ff_2.2-11           
[13] foreach_1.4.1        GenomicRanges_1.12.4 grid_3.0.0           Hmisc_3.12-2        
[17] hwriter_1.3          IRanges_1.18.2       iterators_1.0.6      KernSmooth_2.23-10  
[21] latticeExtra_0.6-24  plyr_1.8             RColorBrewer_1.0-5   reshape2_1.2.2      
[25] rpart_4.1-1          setRNG_2011.11-2     splines_3.0.0        stats4_3.0.0        
[29] stringr_0.6.2        survival_2.37-4      SVGAnnotation_0.93-1 tools_3.0.0         
[33] vsn_3.28.0           XML_3.95-0.2         xtable_1.7-1         zlibbioc_1.6.0    

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