[BioC] AnnotationHub resource down?
James W. MacDonald
jmacdon at uw.edu
Tue Nov 5 18:38:53 CET 2013
I am getting the following error and warning when using AnnotationHub:
> hub <- AnnotationHub()
Error in value[[3L]](cond) :
An error occured when parsing the JSON: Error in download.file(url,
tmp, quiet = TRUE): cannot open URL
'http://annotationhub.bioconductor.org/ah/2.13/getLatestSnapshotDate'
In addition: Warning message:
In download.file(url, tmp, quiet = TRUE) :
cannot open: HTTP status was '0 (null)'
> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] AnnotationHub_1.2.0 IRanges_1.20.4 hom.Rn.inp.db_2.10.1
[4] org.Rn.eg.db_2.10.1 hom.Hs.inp.db_2.10.1 org.Hs.eg.db_2.10.1
[7] org.Dr.eg.db_2.10.1 hom.Mm.inp.db_2.10.1 org.Mm.eg.db_2.10.1
[10] RMySQL_0.9-3 hom.Dr.inp.db_2.10.1 GO.db_2.10.1
[13] RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.25.2
[16] Biobase_2.22.0 BiocGenerics_0.8.0
loaded via a namespace (and not attached):
[1] BiocInstaller_1.12.0 compiler_3.0.2 GenomicRanges_1.14.3
[4] rjson_0.2.13 stats4_3.0.2 tools_3.0.2
[7] XVector_0.2.0
>
Best,
Jim
--
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099
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