[BioC] AnnotationHub resource down?

Dan Tenenbaum dtenenba at fhcrc.org
Tue Nov 5 18:40:08 CET 2013



----- Original Message -----
> From: "James W. MacDonald" <jmacdon at uw.edu>
> To: Bioconductor at r-project.org
> Sent: Tuesday, November 5, 2013 9:38:53 AM
> Subject: [BioC] AnnotationHub resource down?
> 
> I am getting the following error and warning when using
> AnnotationHub:
> 
>  > hub <- AnnotationHub()
> Error in value[[3L]](cond) :
>    An error occured when parsing the JSON: Error in
>    download.file(url,
> tmp, quiet = TRUE): cannot open URL
> 'http://annotationhub.bioconductor.org/ah/2.13/getLatestSnapshotDate'
> In addition: Warning message:
> In download.file(url, tmp, quiet = TRUE) :
>    cannot open: HTTP status was '0 (null)'
> 
>  > sessionInfo()
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-unknown-linux-gnu (64-bit)
> 
> locale:
>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>   [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
> 
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets
> methods
> [8] base
> 
> other attached packages:
>   [1] AnnotationHub_1.2.0  IRanges_1.20.4       hom.Rn.inp.db_2.10.1
>   [4] org.Rn.eg.db_2.10.1  hom.Hs.inp.db_2.10.1 org.Hs.eg.db_2.10.1
>   [7] org.Dr.eg.db_2.10.1  hom.Mm.inp.db_2.10.1 org.Mm.eg.db_2.10.1
> [10] RMySQL_0.9-3         hom.Dr.inp.db_2.10.1 GO.db_2.10.1
> [13] RSQLite_0.11.4       DBI_0.2-7            AnnotationDbi_1.25.2
> [16] Biobase_2.22.0       BiocGenerics_0.8.0
> 
> loaded via a namespace (and not attached):
> [1] BiocInstaller_1.12.0 compiler_3.0.2       GenomicRanges_1.14.3
> [4] rjson_0.2.13         stats4_3.0.2         tools_3.0.2
> [7] XVector_0.2.0
>  >
> 
> Best,
> 
> Jim
> 

Yes it is down. We are working to get it back up as soon as possible.
Thanks
Dan


> 
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>



More information about the Bioconductor mailing list