[BioC] FW: About your motifStack package

[Ou, Jianhong]

>
>Dear Yalbi,
>
>Thank you for using motifStack package and the kind words.
>
>You can try to use function colorset to get a sample color list like:
>
>> col <- colorset("AA", "chemistry")
>> col
>        A         C         D         E         F         G         H
>   I         K         L         M         N
>"#000000" "#00811B" "#D00001" "#D00001" "#000000" "#00811B" "#2000C7"
>"#000000" "#2000C7" "#000000" "#000000" "#800080"
>        P         Q         R         S         T         V         W
>   Y 
>"#000000" "#800080" "#2000C7" "#00811B" "#00811B" "#000000" "#000000"
>"#00811B" 
>
>
>It is easy to change the colors for each amino acids as you want. And then
>use the user defined color set as color of pfm or pcm object.
>
>Hope this will help you.
>
>
>Yours sincerely,
>
>Jianhong Ou
>
>LRB 670A
>Program in Gene Function and Expression
>364 Plantation Street Worcester,
>MA 01605
>
>
>
>
>On 10/29/13 7:33 PM, "Yalbi Balderas" <balderas at ccg.unam.mx> wrote:
>
>>
>>Dear 
>>Jianhong Ou
>>
>>
>>I write you because I am using your motifStack package to plot several
>>amino acid logos, it works fine and it is very helpful,
>>however I would like to know if there is an option in which I can choose
>>only two colors to represent two different types of amino acids (those
>>who binds metal or not), I have tried with several options in colorset
>>but none of them is adequate for me. I hope you could tell me what can I
>>do. 
>>
>>Thank you very much for your time,
>>
>>
>>
>>==================================
>>Yalbi Balderas-Martínez
>>Center for Genomics Sciences
>>UNAM
>>Mexico
>