[BioC] GWAS with family data
naomi at stat.psu.edu
Tue Apr 15 19:09:04 CEST 2014
Is there software in R for doing GWAS analysis with family case-control
I started with the data in GWASdata. This is a set of 13 families of 2
ethnicities. So just treating the data as a bunch of 2x3 tables is
clearly not correct.
I cannot seem to find any software that is extensible. The workflow in
GWAStools seems OK (I did not do all of it) but it is a pipeline - not
really the same as controlling my own analysis.
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