[BioC] b37 version of BSGenome for Gviz
mtmorgan at fhcrc.org
Tue Aug 12 22:06:14 CEST 2014
On 08/12/2014 12:43 PM, mehaffey wrote:
> I am looking to see if there is a b37 package comparable to the
> BSgenome.Hsapiens.UCSC.hg19 package? I would like to use the plotTrack
> function of the Gviz package with my bam files but they were aligned using
> b37. The with and without chr seems to be causing a problem. I have exome
> and whole genome files so its a lot of resources to have them duplicated. Is
> there a b37 version package or a conversion workflow/tool?
seqlevelsStyle(BSgenome.Hsapiens.UCSC.hg19) = "NCBI"
does the trick?
> Many thanks,
> [[alternative HTML version deleted]]
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