[BioC] WGCNA

[Peter Langfelder]

My guess is that this some kind of RStudio or other third party R GUI
quirk. But if I'm wrong, please correct me.

Best,

Peter

On Sat, Feb 15, 2014 at 5:55 PM, Tim Triche, Jr. <tim.triche at gmail.com> wrote:
> I'm going to guess that, based on your sessionInfo() alone, your R install
> is hosed:
>
>> Error in x[["Version"]] : subscript out of bounds
> In addition: Warning message:
> In FUN(c("codetools", "compiler", "doParallel", "foreach", "impute",  :
>   DESCRIPTION file of package 'impute' is missing or broken
>
>
> That's not good. You might need to reinstall (at least) the 'impute'
> package and possibly several others.
>
>
> Statistics is the grammar of science.
> Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>
>
>
> On Sat, Feb 15, 2014 at 5:45 PM, Jerry Cholo <jerrycholo at gmail.com> wrote:
>
>> Here you go:
>>
>> > sessionInfo()
>> R version 3.0.2 (2013-09-25)
>> Platform: x86_64-w64-mingw32/x64 (64-bit)
>> locale:
>> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
>> States.1252
>> [3] LC_MONETARY=English_United States.1252
>> LC_NUMERIC=C
>> [5] LC_TIME=English_United States.1252
>> attached base packages:
>>  [1] parallel  splines   grid      stats     graphics  grDevices utils
>> datasets  methods
>> [10] base
>> other attached packages:
>>  [1] nlme_3.1-113          igraph_0.7.0          GEOquery_2.28.0
>> Biobase_2.22.0
>>  [5] BiocGenerics_0.8.0    cluster_1.14.4        BiocInstaller_1.12.0
>> WGCNA_1.34
>>  [9] Hmisc_3.14-0          Formula_1.1-1         survival_2.37-7
>> lattice_0.20-24
>> [13] flashClust_1.01-2     dynamicTreeCut_1.60-1
>> loaded via a namespace (and not attached):
>> Error in x[["Version"]] : subscript out of bounds
>> In addition: Warning message:
>> In FUN(c("codetools", "compiler", "doParallel", "foreach", "impute",  :
>>   DESCRIPTION file of package 'impute' is missing or broken
>>
>> Thanks,
>> Jerry
>>
>>
>> On Sat, Feb 15, 2014 at 5:31 PM, Tim Triche, Jr. <tim.triche at gmail.com>wrote:
>>
>>> This appears to be an issue with a C function not being able to call
>>> corFast.  Please post your
>>>
>>> sessionInfo()
>>>
>>> when reporting issues like this as it will make it MUCH easier for
>>> library authors to support.
>>>
>>> best,
>>>
>>> --t
>>>
>>>
>>>
>>> Statistics is the grammar of science.
>>> Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>
>>>
>>>
>>> On Sat, Feb 15, 2014 at 5:24 PM, Jerry Cholo <jerrycholo at gmail.com>wrote:
>>>
>>>> Hello,
>>>>
>>>> When I ran this line:
>>>> > sft=pickSoftThreshold(datExprFemale,powerVector=powers)
>>>>
>>>> I got this error:
>>>>
>>>> Error in { :
>>>>   task 1 failed - ""corFast" not available for .C() for package "WGCNA""
>>>>
>>>> May someone let me know how I could fix it?
>>>>
>>>> Thanks,
>>>> Jerry
>>>>
>>>>         [[alternative HTML version deleted]]
>>>>
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>>>>
>>>
>>>
>>
>
>         [[alternative HTML version deleted]]
>
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