[BioC] Subsetting clusters in flowPeaks

[h.r.jones at qmul.ac.uk]

Oh I worked it out, after using the assign.flowPeaks function, I just used:

summary(data [assigned == 1])

Thanks
Hefin
Sent from my BlackBerry® smartphone www.blackberry.com

-----Original Message-----
From: <h.r.jones at qmul.ac.uk>
Sender: <bioconductor-bounces at r-project.org>
Date: Mon, 14 Jul 2014 15:42:22 
To: bioconductor at r-project.org<bioconductor at r-project.org>
Reply-To: <h.r.jones at qmul.ac.uk>
Subject: [BioC] Subsetting clusters in flowPeaks

Hi!

I'm using flowPeaks in combination with flowCore and flowViz to identify clusters in flow cytometry data.  I can get adequate clustering of my flow frame, and now I want to get summary statistics for each identified cluster (median fluorescence intensity for each parameter etc.).  I can't find any way of subsetting my flow frame to only include particular clusters to get this summary information.  Am I able to do this?  Any help would be much appreciated.

Thank you

Hefin
Sent from my BlackBerry® smartphone www.blackberry.com
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