[BioC] Installing Workflows for Oligonucleotide arrays

[James W. MacDonald]

Not sure what you are asking for here. Will you clarify please?

Best,

Jim


On 6/10/2014 5:40 AM, Rinaldy K [guest] wrote:
> Is there a way to install workflows for microarray analysis on Bioconductor v2.14?
>
> or should i downgrade to bioconductor v2.13?
>
>> source("http://bioconductor.org/workflows.R")
> Bioconductor version 2.14 (BiocInstaller
>    1.14.2), ?biocLite for help
> Error: BiocInstaller:::BIOC_VERSION == "2.13" is not TRUE
>
>   -- output of sessionInfo():
>
>> sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.14.2
>
> loaded via a namespace (and not attached):
>   [1] affyio_1.32.0        base64_1.1           Biobase_2.24.0
>   [4] BiocGenerics_0.10.0  Biostrings_2.32.0    bit_1.1-12
>   [7] codetools_0.2-8      digest_0.6.4         ellipse_0.3-8
> [10] ff_2.2-13            foreach_1.4.2        GenomeInfoDb_1.0.2
> [13] GenomicRanges_1.16.3 grid_3.1.0           illuminaio_0.6.0
> [16] IRanges_1.22.8       iterators_1.0.7      lattice_0.20-29
> [19] Matrix_1.1-3         matrixStats_0.10.0   mvtnorm_0.9-99992
> [22] parallel_3.1.0       R.methodsS3_1.6.1    Rcpp_0.11.2
> [25] RcppEigen_0.3.2.1.2  stats4_3.1.0         tools_3.1.0
> [28] VGAM_0.9-4           XVector_0.4.0        zlibbioc_1.10.0
>
> --
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>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099