[BioC] Installing Workflows for Oligonucleotide arrays

[Dan Tenenbaum]

----- Original Message -----
> From: "Rinaldy K [guest]" <guest at bioconductor.org>
> To: bioconductor at r-project.org, rinkz5 at gmail.com
> Sent: Tuesday, June 10, 2014 2:40:14 AM
> Subject: [BioC] Installing Workflows for Oligonucleotide arrays
> 
> Is there a way to install workflows for microarray analysis on
> Bioconductor v2.14?
> 
> or should i downgrade to bioconductor v2.13?
> 


This should be building for the latest release version (2.14). I'll look into it.

Dan


> > source("http://bioconductor.org/workflows.R")
> Bioconductor version 2.14 (BiocInstaller
>   1.14.2), ?biocLite for help
> Error: BiocInstaller:::BIOC_VERSION == "2.13" is not TRUE
> 
>  -- output of sessionInfo():
> 
> > sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> 
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
> States.1252
> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> 
> other attached packages:
> [1] BiocInstaller_1.14.2
> 
> loaded via a namespace (and not attached):
>  [1] affyio_1.32.0        base64_1.1           Biobase_2.24.0
>  [4] BiocGenerics_0.10.0  Biostrings_2.32.0    bit_1.1-12
>  [7] codetools_0.2-8      digest_0.6.4         ellipse_0.3-8
> [10] ff_2.2-13            foreach_1.4.2        GenomeInfoDb_1.0.2
> [13] GenomicRanges_1.16.3 grid_3.1.0           illuminaio_0.6.0
> [16] IRanges_1.22.8       iterators_1.0.7      lattice_0.20-29
> [19] Matrix_1.1-3         matrixStats_0.10.0   mvtnorm_0.9-99992
> [22] parallel_3.1.0       R.methodsS3_1.6.1    Rcpp_0.11.2
> [25] RcppEigen_0.3.2.1.2  stats4_3.1.0         tools_3.1.0
> [28] VGAM_0.9-4           XVector_0.4.0        zlibbioc_1.10.0
> 
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