[BioC] Version 1.10 of spade appears to be non-compatible with Cytoscape 2.8.x

Michael Linderman michael.d.linderman at gmail.com
Thu Mar 20 14:19:02 CET 2014

I don't know if the response will find its way back to you... but I filed an issue on your behalf at github.


On Mar 19, 2014, at 5:38 PM, John Quinn [guest] wrote:

> Running spade 1.10 produces outputs that contain a folder of CSV tables, whereas 1.8 produced a folder of pdf files.  The latter works with Cytoscape 2.8.x and the prior produces empty boxes.  
> I prefer sticking with Cytoscape 2.8 as opposed to moving up to 3.x as the documentation seems much better so far, so is there a place where spade 1.8 is still available for download?
> -- output of sessionInfo(): 
> R version 3.0.1 (2013-05-16)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods base 
> --
> Sent via the guest posting facility at bioconductor.org.

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