[BioC] barcode support for other platforms

Matthew McCall mccallm at gmail.com
Wed Sep 10 13:35:34 CEST 2014


The barcode is now implemented on 5 platforms -- the 3 you mention plus
GPL6244 and GPL6246. For other platforms, I would check out SCAN.UPC.

 On Sep 9, 2014 9:20 PM, "Romi Admanit [guest]" <guest at bioconductor.org>

> I am trying to assess whether genes in my samples are over expressed
> relative to a null mean.
> I use the barcode function in the R package frma  for this purpose.
> As far as I understand the current Barcode version support only Affymetrix
> and only three platforms in it : GPL570, GPL96 and GPL1261.
> I do have other platforms.
> Do you happen to have mu null(and tau null) for other platforms?
> Do you know how can I do the same calculations for those as well?
> Thanks a lot,
> Romi
>  -- output of sessionInfo():
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> --
> Sent via the guest posting facility at bioconductor.org.

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