[BioC] barcode support for other platforms
Matthew McCall
mccallm at gmail.com
Wed Sep 10 13:35:34 CEST 2014
Romi,
The barcode is now implemented on 5 platforms -- the 3 you mention plus
GPL6244 and GPL6246. For other platforms, I would check out SCAN.UPC.
Best,
Matt
On Sep 9, 2014 9:20 PM, "Romi Admanit [guest]" <guest at bioconductor.org>
wrote:
> I am trying to assess whether genes in my samples are over expressed
> relative to a null mean.
> I use the barcode function in the R package frma for this purpose.
> As far as I understand the current Barcode version support only Affymetrix
> and only three platforms in it : GPL570, GPL96 and GPL1261.
> I do have other platforms.
> Do you happen to have mu null(and tau null) for other platforms?
> Do you know how can I do the same calculations for those as well?
> Thanks a lot,
> Romi
>
> -- output of sessionInfo():
>
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
[[alternative HTML version deleted]]
More information about the Bioconductor
mailing list