[BioC] barcode support for other platforms

[Johnson, William Evan]

Romi, 

Check the SCAN.UPC package and see if it has the functionalities you need. For more information check out our paper:

http://www.pnas.org/content/110/44/17778.full

Thanks!

Evan


On Sep 10, 2014, at 6:00 AM, bioconductor-request at r-project.org wrote:

> Message: 15
> Date: Tue,  9 Sep 2014 18:20:50 -0700 (PDT)
> From: "Romi Admanit [guest]" <guest at bioconductor.org>
> To: bioconductor at r-project.org, reuma at jimmy.harvard.edu
> Subject: [BioC] barcode support for other platforms
> Message-ID: <20140910012050.E643B60F1C at nutria.fhcrc.org>
> 
> I am trying to assess whether genes in my samples are over expressed
> relative to a null mean.
> I use the barcode function in the R package frma  for this purpose.
> As far as I understand the current Barcode version support only Affymetrix
> and only three platforms in it : GPL570, GPL96 and GPL1261.
> I do have other platforms.
> Do you happen to have mu null(and tau null) for other platforms?
> Do you know how can I do the same calculations for those as well?
> Thanks a lot,
> Romi
> 
> -- output of sessionInfo(): 
> 
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base  
> 
> --
> Sent via the guest posting facility at bioconductor.org.