[BioC] power calculation of RNA-Seq

[Yanzhu Lin]

Hi Sean,

Thanks, however, the package mentioned by Dr. Wu hasn't published yet, so I
can't find the user guide for the package.

Best,


Yanzhu


On Wed, Sep 10, 2014 at 10:13 AM, Sean Davis <sdavis2 at mail.nih.gov> wrote:

> Hi, Yanzhu.
>
> All bioconductor packages come with a vignette describing their usage.
>  Also, when using R, there is extensive help built into each package.  To
> get you started, check out the vignette here:
>
>
> http://www.bioconductor.org/packages/release/bioc/vignettes/RNASeqPower/inst/doc/samplesize.pdf
>
> Sean
>
>
>
>  On Wed, Sep 10, 2014 at 9:21 AM, Yanzhu Lin <mlinyzh at gmail.com> wrote:
>
>>  Hi Dr. Wu,
>>
>> I am very interested in the package of power calculation of RNA-Seq data
>> with factorial design mentioned in your post and I would like to try it. I
>> have downloaded the package from the link you provided. But, I am not
>> clear
>> how to use it, could you give me an example about how to use it?
>>
>> Your help will be greatly appreciated.
>>
>>
>>
>> Best,
>>
>>
>> Yanzhu
>>
>>
>>
>>
>> On Tue, Jul 1, 2014 at 9:58 AM, Michael Love <michaelisaiahlove at gmail.com
>> >
>> wrote:
>>
>> > Let's keep the discussion on the list. This provides a searchable
>> > archive for other Bioc users with similar questions.
>> >
>> > A google search for "bioconductor rna-seq power calculation" reveals:
>> >
>> > http://www.bioconductor.org/packages/release/bioc/html/RNASeqPower.html
>> >
>> >
>> > On Tue, Jul 1, 2014 at 9:53 AM, Yanzhu Lin <mlinyzh at gmail.com> wrote:
>> > >
>> > > Hi Michael,
>> > >
>> > > Do you happenly know there is any package or paper works for power
>> > calculation of factorial design of RNA-Seq project? Thanks.
>> > >
>> > >
>> > > Best,
>> > >
>> > >
>> > > Yanzhu
>> >
>>
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>>
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>

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