[BioC] Bioinformatics researching Schizophrenia

[Chris Clarkson [guest]]

I am an undergraduate student and I have been given a project that involves bioinformatics. My supervisor researches chromosome abnormalities and gene expression and he has been given a list of GWAS generated SNPs, that have been linked to Schizophrenia and it has been assigned to me to generate a list of potential genes/regions that we could CROSS REFERENCE with the other list to see if any of these SNPs occur at sites such as miRNA sites, methyltransferase genes, Acetylation and Deacetylation genes etc. that could be implicated in Schizophrenia.
I was hoping you would be able to recommend the necessary R-Packages for A. generating a list of potentially implicated regions and B. to cross validate this list with the one I have received.
Thank you

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