R-1.6.1, Mac OS X 10.2.2 build failure
Gregory Wright
gwright@packetstorm.com
Thu, 14 Nov 2002 18:22:04 -0500
dlcompat seems to be the same (the darwinports script downloads it from
the fink project at sourceforge). I'm concentrating on g77--I've found
at least on packaging error, but repairing it did not fix the R-1.6.1
build. I will give it a go with a hand built g77.
(If the error is in darwinports I would at least like to give
constructive feedback on how it might be fixed.)
More anon.
Best Wishes,
Greg
On Thursday, November 14, 2002, at 05:40 PM, Jan de Leeuw wrote:
> The dlcompat and g77 in darwinports (that Greg seems to be using)
> are different from the ones in fink.
>
> On Thursday, November 14, 2002, at 02:34 PM, Luke Tierney wrote:
>
>> You might want to double check the dlcompat you have. THere was some
>> discussiion about this a week or two ago in conneciton with plain
>> darwin I think. Mac compilers prepend underscores to C names; most
>> other systems don't. R's config assumes that R has to prepend an
>> underscore. But as I recall you can configure dlcompat to do that for
>> you, and if that is what you have then you are getting two underscores
>> instead of one. Don't know if that is the problem, but it's something
>> to check.
>>
>> luke
>>
>> On Thu, 14 Nov 2002, Gregory Wright wrote:
>>
>>>
>>> On Thursday, November 14, 2002, at 12:35 PM, Jan de Leeuw wrote:
>>>
>>>> I know what I would do. It does not rebuild "methods". I would do a
>>>> make distclean in your build directory and configure from scratch.
>>>>
>>>>
>>>>
>>>
>>> Hi,
>>>
>>> I unpacked a fresh 1.6.1 tarball, reconfigured and rebuilt from
>>> scratch. The results were similar:
>>>
>>> <...stuff omitted..>
>>> cc1: warning: changing search order for system directory
>>> "/usr/local/include"
>>> cc1: warning: as it has already been specified as a non-system
>>> directory
>>> gcc -no-cpp-precomp -I../../../../include -I/usr/local/include
>>> -fno-common -g -O2 -c methods_list_dispatch.c -o
>>> methods_list_dispatch.o
>>> cc1: warning: changing search order for system directory
>>> "/usr/local/include"
>>> cc1: warning: as it has already been specified as a non-system
>>> directory
>>> gcc -no-cpp-precomp -I../../../../include -I/usr/local/include
>>> -fno-common -g -O2 -c method_meta_data.c -o method_meta_data.o
>>> cc1: warning: changing search order for system directory
>>> "/usr/local/include"
>>> cc1: warning: as it has already been specified as a non-system
>>> directory
>>> gcc -no-cpp-precomp -I../../../../include -I/usr/local/include
>>> -fno-common -g -O2 -c slot.c -o slot.o
>>> cc1: warning: changing search order for system directory
>>> "/usr/local/include"
>>> cc1: warning: as it has already been specified as a non-system
>>> directory
>>> gcc -no-cpp-precomp -I../../../../include -I/usr/local/include
>>> -fno-common -g -O2 -c class_support.c -o class_support.o
>>> cc1: warning: changing search order for system directory
>>> "/usr/local/include"
>>> cc1: warning: as it has already been specified as a non-system
>>> directory
>>> gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o
>>> methods.so do_substitute_direct.o methods_list_dispatch.o
>>> method_meta_data.o slot.o class_support.o
>>> mkdir -p -- ../../../../library/methods/libs
>>> dumping R code in package 'methods'
>>> Error in .Call("R_initialize_methods_metadata", table, PACKAGE =
>>> "methods") :
>>> .Call function name not in load table
>>> Execution halted
>>> make[4]: *** [../../../library/methods/R/all.rda] Error 1
>>> make[3]: *** [all] Error 2
>>> make[2]: *** [R] Error 1
>>> make[1]: *** [R] Error 1
>>> make: *** [R] Error 1
>>>
>>> The configuration was
>>>
>>> bash-2.05a$ export TCLTK_LIBS="-framework Tcl -framework Tk"
>>> bash-2.05a$ export
>>> TCLTK_CPPFLAGS="-I/Library/Frameworks/Tcl.framework/Headers
>>> -I/Library/Frameworks/Tk.framework/Headers"
>>> ../configure
>>> --with-tcl-config=/Library/Frameworks/Tcl.framework/tclConfig.sh
>>> --with-tk-config=/Library/Frameworks/Tk.framework/tkConfig.sh
>>>
>>>
>>> and configure's summary was
>>>
>>> R is now configured for powerpc-apple-darwin6.2
>>>
>>> Source directory: .
>>> Installation directory: /usr/local
>>>
>>> C compiler: gcc -g -O2
>>> C++ compiler: g++ -g -O2
>>> Fortran compiler: g77 -g -O2
>>>
>>> X11 support: yes
>>> Gnome support: no
>>> Tcl/Tk support: yes
>>> Readline support: yes
>>>
>>> R profiling support: yes
>>> R as a shared library: no
>>>
>>> Recommended packages: yes
>>>
>>>
>>> Is there something obvious that I should be examining to find the
>>> root
>>> of the this?
>>>
>>> Best Wishes,
>>> Greg Wright
>>>
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>>
>> --
>> Luke Tierney
>> University of Iowa Phone: 319-335-3386
>> Department of Statistics and Fax: 319-335-3017
>> Actuarial Science
>> 241 Schaeffer Hall email: luke@stat.uiowa.edu
>> Iowa City, IA 52242 WWW: http://www.stat.uiowa.edu
>>
>>
> ===
> Jan de Leeuw; Professor and Chair, UCLA Department of Statistics;
> Editor: Journal of Multivariate Analysis, Journal of Statistical
> Software
> US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554
> phone (310)-825-9550; fax (310)-206-5658; email:
> deleeuw@stat.ucla.edu
> homepage: http://gifi.stat.ucla.edu
>
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