[Rd] Numerical optimisation and "non-feasible" regions
mathieu.ribatet at epfl.ch
Thu Aug 7 13:45:31 CEST 2008
Dear Patrick (and other),
Well I used the Sylvester's criteria (which is equivalent) to test for
this. But unfortunately, this is not the only issue!
Well, to sum up quickly, it's more or less like geostatistics.
Consequently, I have several unfeasible regions (covariance, margins and
The problem seems that the unfeasible regions may be large and sometimes
lead to optimization issues - even when the starting values are well
This is the reason why I wonder if setting by myself a $-\infty$ in the
composite likelihood function is appropriate here.
However, you might be right in setting a tolerance value 'eps' instead
of the theoretical bound eigen values > 0.
Thanks for your tips,
Patrick Burns a écrit :
> If the positive definiteness of the covariance
> is the only issue, then you could base a penalty on:
> eps - smallest.eigen.value
> if the smallest eigen value is smaller than eps.
> Patrick Burns
> patrick at burns-stat.com
> +44 (0)20 8525 0696
> (home of S Poetry and "A Guide for the Unwilling S User")
> Mathieu Ribatet wrote:
>> Thanks Ben for your tips.
>> I'm not sure it'll be so easy to do (as the non-feasible regions
>> depend on the model parameters), but I'm sure it's worth giving a try.
>> Thanks !!!
>> Ben Bolker a écrit :
>>> Mathieu Ribatet <mathieu.ribatet <at> epfl.ch> writes:
>>>> Dear list,
>>>> I'm currently writing a C code to compute the (composite) likelihood -
>>>> well this is done but not really robust. The C code is wrapped in an R
>>>> one which call the optimizer routine - optim or nlm. However, the
>>>> fitting procedure is far from being robust as the parameter space
>>>> depends on the parameter - I have a covariance matrix that should be a
>>>> valid one for example.
>>> One reasonably straightforward hack to deal with this is
>>> to add a penalty that is (e.g.) a quadratic function of the
>>> distance from the feasible region, if that is reasonably
>>> straightforward to compute -- that way your function will
>>> get gently pushed back toward the feasible region.
>>> Ben Bolker
>>> R-devel at r-project.org mailing list
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