[Rd] Log file of building vignette in RCMD check

Uwe Ligges ligges at statistik.tu-dortmund.de
Mon Jun 6 18:15:42 CEST 2011

On 06.06.2011 15:30, Stefan McKinnon Høj-Edwards wrote:
> Hello,
> I am trying to run "RCMD check" on a package. It performs OK, with the exception of a single warning:
> * checking package vignettes in 'inst/doc' ... WARNING
> Package vignette(s) without corresponding PDF:
>     AnnotationFuncsUserguide.Rnw

R CMD build should build the vignettes. If it did not succeed, see its 
output for details.

Uwe Ligges

> As I understand the problem, the vignette is not built. However, I have no problems in doing so manually.
> How do I fix this problem? I cannot find any logs for building the vignette, however the output from building the pdf-file of the manual is found in the .Rcheck folder.
> On a similar note, as my vignette includes a biblio, I have to run "latex" twice to get the citations referenced properly with a number. Is this an issue? How can I work around it? (The package is submitted to BioC, so there might be other rules there?)
> Thank you in advanced.
> Yours sincerely,
> Stefan McKinnon Høj-Edwards     Dept. of Genetics and Biotechnology
> PhD student                     Faculty of Agricultural Sciences
> stefan.hoj-edwards at agrsci.dk    Aarhus University
> Tel.: +45 8999 1291             Blichers Allé 20, Postboks 50
> Web: www.iysik.com              DK-8830 Tjele
>                                  Tel.: +45 8999 1900
>                                  Web: www.agrsci.au.dk
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