[R] Clustering and bootstrap

David Duffy David.Duffy at qimr.edu.au
Fri Sep 23 05:04:53 CEST 2005

> From: Eric Pante <ericpante at hotmail.com>
> Dear Listers,
> I emailed the list a few days ago about how to bootstrap a community
> matrix (species by sites) and get a consensus tree with node support. A
> friend pointed out that a similar question remained unanswered in 2004.
> I wish to re-word my question: is anyone aware of a package / method to
> obtain a majority-rule consensus tree from x distance matrices ? Is
> anyone using R to generate phylogenetic trees with node support ?

This is not (currently ;)) an R solution nor bootstrapping, instead
using a pretty general reversible-jump type Gibbs sampler (see P 11 onward
and refs)


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