[R] isoMDS and dist

[stephen sefick]

I don't know for sure about isoMDS, but package vegan is a good place
to start with a very good viginette.

Stephen

On Thu, Sep 4, 2008 at 5:02 PM, Carolyn A. Pucko <cpucko at uvm.edu> wrote:
>
> I am starting with a matrix in which rows are vegetation plots and columns
> are various characteristics including ID# and elevation. I removed elevation
> and ID columns to avoid having those characteristics influence the distances
> between points which I calculated using the "dist" command. The resulting
> distance file was then used in isoMDS.
>
> What I want to know is whether I can reattach the ID and elevation onto the
> point location information given from isoMDS? or is it possible that the
> order given in the isoMDS output is not the same as the order of the
> original data used to calculate distances?
>
> Thanks,
> Carrie Pucko
> University of Vermont
>
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-- 
Stephen Sefick
Research Scientist
Southeastern Natural Sciences Academy

Let's not spend our time and resources thinking about things that are
so little or so large that all they really do for us is puff us up and
make us feel like gods. We are mammals, and have not exhausted the
annoying little problems of being mammals.

	-K. Mullis