[R] R 2.10 'memory leak'? on OS X

Stropharia stevenworthington at hotmail.com
Fri Nov 20 06:33:47 CET 2009


Dear R users,

I am running R 2.10.0 on OS X 10.5.8.

I had been running 2.10 successfully for about a week (and have used
previous R versions for 2+ years on the same computer) until 2 days ago it
failed to start up for me. Now when I try to start R, the application tries
to initiate for several minutes then crashes. Looking at the activity
monitor, my memory usage goes from having about 1.6Gb free (out of 2Gb) to
<7Mb in the first 10-15 seconds of attempting to start the program. At this
point I either have to force quit R (as everything starts to freeze up) or
wait several minutes for it to crash.

I have erased the application and reinstalled it 4 times now - with exactly
the same result. I looked around in the Library and System folders to see if
any other files needed to be removed, but couldn't find any. I have also
restarted the computer and repaired permissions multiple times - and then
reinstalled R, with no luck. The exact same thing happens if I start R64.

I did not updated OS X or R, or install any other programs, just prior to
this first happening and am at a loss to explain what's going on. I have
copied the first part of one of the crash logs below. Does anyone have any
ideas for to remedy this?

best,

Steve


#---------------- Crash log ------------------------
Process:         R [231]
Path:            /Applications/R.app/Contents/MacOS/R
Identifier:      org.R-project.R
Version:         R 2.10.0 GUI 1.30 Leopard build 32-bit (5511)
Code Type:       X86 (Native)
Parent Process:  launchd [101]

Date/Time:       2009-11-18 23:15:45.570 -0500
OS Version:      Mac OS X 10.5.8 (9L31a)
Report Version:  6
Anonymous UUID:  D86CDCBC-00FD-4AEE-AB50-2EFE0DAE9E1E

Exception Type:  EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000067ee2
Crashed Thread:  0

Thread 0 Crashed:
0   libSystem.B.dylib             0xffff07c7 __memcpy + 39
(cpu_capabilities.h:246)
1   com.apple.CoreFoundation       0x96a6a0b4 __CFStringEncodeByteStream +
4052
2   com.apple.Foundation           0x94446eb7
-[NSString(NSStringOtherEncodings)
getBytes:maxLength:usedLength:encoding:options:range:remainingRange:] + 295
3   com.apple.Foundation           0x94446a1a _NSNewStringByAppendingStrings
+ 538
4   com.apple.Foundation           0x94446760 -[NSString
stringByAppendingString:] + 192
5   org.R-project.R               0x00009ce8 -[RController doLoadHistory:] +
808
6   org.R-project.R               0x000076df -[RController awakeFromNib] +
2319
7   com.apple.CoreFoundation       0x96ac07f5 -[NSSet
makeObjectsPerformSelector:] + 181
8   com.apple.AppKit               0x92efed8e -[NSIBObjectData
nibInstantiateWithOwner:topLevelObjects:] + 1533
9   com.apple.AppKit               0x92ef4fba loadNib + 264
10  com.apple.AppKit               0x92ef491c +[NSBundle(NSNibLoading)
_loadNibFile:nameTable:withZone:ownerBundle:] + 946
11  com.apple.AppKit               0x92ef455f +[NSBundle(NSNibLoading)
loadNibFile:externalNameTable:withZone:] + 171
12  com.apple.AppKit               0x92ef449d +[NSBundle(NSNibLoading)
loadNibNamed:owner:] + 391
13  org.R-project.R               0x00002538 main + 296
14  org.R-project.R               0x000023d6 start + 54
#----------------------------------------------------------------------
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