[R] plot significant spearman correlation
ligges at statistik.tu-dortmund.de
Sat Feb 9 18:56:31 CET 2013
On 05.02.2013 17:08, Ozgul Inceoglu wrote:
> I calculate the correlation between two matrices cor(x,y, method="spearman")
> and I am wondering if it possible to see only the significant correlations. I can do that for single OTUs with cor.test() command but I would like to have an output for whole matrix. Besides,I would like to plot the relative abundance of each OTU, against the number of significant pair-wise correlations to other OTUs. However, I do not know how to introduce p <.05 parameter in the script.
Please read the posting guide that suggests to submit reproducible code.
We can hardly help "how to introduce p <.05 parameter in the script" if
we do not know that script.
> Thank you very much!
> R-help at r-project.org mailing list
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
More information about the R-help