[R] Package check using --as-cran

[Marc Girondot]

Le 02/01/13 17:38, Uwe Ligges a écrit :
>
>
> On 02.01.2013 17:28, Marc Girondot wrote:
>> Le 02/01/13 16:03, Uwe Ligges a écrit :
>>>
>>>
>>> On 02.01.2013 11:58, Marc Girondot wrote:
>>>> I use R 2.15.2 on MacosX 10.8.2
>>>>
>>>> I have a problem checking for a package that I want to submit in CRAN.
>>>>
>>>> When I check like that, no problem or warning are detected.
>>>> system("R CMD check '[path]/phenology'")
>>>>
>>>> I create the .tar.gz package with that. The file phenology_3.43.tar.gz
>>>> is generated. I can install the package and it works.
>>>> system("R CMD build '[path]/phenology'")
>>>>
>>>> But if I check it using --as-cran as required by CRAN policy,
>>>> system("R CMD check '[path]/phenology_3.43.tar.gz' --as-cran")
>>>>
>>>> I get an error:
>>>> * using log directory ‘[path]/Phenology Package/phenology.Rcheck’
>>>> * using R version 2.15.2 (2012-10-26)
>>>> * using platform: i386-apple-darwin9.8.0 (32-bit)
>>>> * using session charset: UTF-8
>>>> * checking for file ‘phenology/DESCRIPTION’ ... OK
>>>> * checking extension type ... Package
>>>> * this is package ‘phenology’ version ‘3.43’
>>>> * checking CRAN incoming feasibility ... OK
>>>> Maintainer: ‘Marc Girondot <marc.girondot at u-psud.fr>’
>>>> * checking package namespace information ... OK
>>>> * checking package dependencies ... OK
>>>> * checking if this is a source package ... OK
>>>> * checking if there is a namespace ... OK
>>>> * checking for executable files ... OK
>>>> * checking for hidden files and directories ... OK
>>>> * checking whether package ‘phenology’ can be installed ... ERROR
>>>> Installation failed.
>>>> See ‘[path]/phenology.Rcheck/00install.out’ for details.
>>>>
>>>> The file 00install.out has no more information, it is just a copy of
>>>> these informations.
>>>>
>>>> I would like to know if there is a "verbose" version of the check.
>>>
>>>
>>> Well, the "verbos"e part is in file
>>> [path]/phenology.Rcheck/00install.out
>>> as the ERROR message told you.
>>>
>>> Best,
>>> Uwe Ligges
>>>
>>>
>>>
>> Thanks... I had read this file but then the "verbose" message is 
>> obscure !
>> Any idea ?
>>
>> Thanks
>>
>> Marc
>>
>> * installing *source* package ‘phenology’ ...
>> ** R
>> ** data
>> **  moving datasets to lazyload DB
>> ** preparing package for lazy loading
>> ** help
>> *** installing help indices
>> ** building package indices
>> ** testing if installed package can be loaded
>> *** arch - i386
>> sh: de: command not found
>
> Oh, sh fails saying that some shell command "de" was not found that 
> was required when trying to load the package. Not sure if that is part 
> of the phenology startup?
>
> Uwe
>
>
>
>> *** arch - x86_64
>> sh: de: command not found
>> ERREUR : loading failed for ‘i386’, ‘x86_64’
>> * removing ‘/Users/marcgirondot/Documents/Espace de travail
>> R/Phenology/Source fit/Phenology Package/phenology.Rcheck/phenology’
>>
>>
>>
>

Dear Uwe,

I do not use this command de (no idea what is it !)

I try first to simplify at the maximum the package and I get the same error.

Then I check it on windows XP, R 2.15.2 and it works. No error.

Then it seems there is a bug in CMD check path/name --as-cran in the 
MacosX version.

Thanks a lot for your help,

Marc

-- 
__________________________________________________________
Marc Girondot, Pr

Laboratoire Ecologie, Systématique et Evolution
Equipe de Conservation des Populations et des Communautés
CNRS, AgroParisTech et Université Paris-Sud 11 , UMR 8079
Bâtiment 362
91405 Orsay Cedex, France

Tel:  33 1 (0)1.69.15.72.30   Fax: 33 1 (0)1.69.15.73.53
e-mail: marc.girondot at u-psud.fr
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