[R] Problems downloading and installing nlme under Linux Mint 15

[Clint Bowman]

There is the error message:

Error : package ‘lattice’ was built before R 3.0.0: please re-install it

Perhaps the problem lies there.

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On Tue, 21 Jan 2014, John Sorkin wrote:

> I am running R under Linux Mint 15 and trying to download and install
> nlme. During the download I get an error message:
> Warning message:
> In install.packages("nlme") :
>  installation of package ‘nlme’ had non-zero exit status
>
> When I try to load the package, I get an error message
>> library(nlme)
> Error: package ‘nlme’ was built before R 3.0.0: please re-install it
> Why am I getting the error message, and what can I do to fix the
> problem? Please see output of R session below.
> Thank you,
> John
>
>
>> version
> platform       i486-pc-linux-gnu
> arch           i486
> os             linux-gnu
> system         i486, linux-gnu
> status
> major          3
> minor          0.1
> year           2013
> month          05
> day            16
> svn rev        62743
> language       R
> version.string R version 3.0.1 (2013-05-16)
> nickname       Good Sport
>
>
>> install.packages("nlme")
> Installing package into ‘/home/john/R/i486-pc-linux-gnu-library/3.0’
> (as ‘lib’ is unspecified)
> --- Please select a CRAN mirror for use in this session ---
> trying URL
> 'http://watson.nci.nih.gov/cran_mirror/src/contrib/nlme_3.1-113.tar.gz'
> Content type 'application/octet-stream' length 752188 bytes (734 Kb)
> opened URL
> ==================================================
> downloaded 734 Kb
>
> * installing *source* package ‘nlme’ ...
> ** package ‘nlme’ successfully unpacked and MD5 sums checked
> ** libs
> gfortran   -fpic  -O2 -pipe -g  -c chol.f -o chol.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c corStruct.c -o corStruct.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c gnls.c -o gnls.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c init.c -o init.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c matrix.c -o matrix.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c nlOptimizer.c -o nlOptimizer.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c nlme.c -o nlme.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c nlmefit.c -o nlmefit.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c nls.c -o nls.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -fvisibility=hidden
> -fpic  -O2 -pipe -g  -c pdMat.c -o pdMat.o
> gfortran   -fpic  -O2 -pipe -g  -c rs.f -o rs.o
> gcc -std=gnu99 -shared -o nlme.so chol.o corStruct.o gnls.o init.o
> matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran
> -lm -lquadmath -L/usr/lib/R/lib -lR
> installing to /home/john/R/i486-pc-linux-gnu-library/3.0/nlme/libs
> ** R
> ** data
> *** moving datasets to lazyload DB
> ** inst
> ** byte-compile and prepare package for lazy loading
> Error : package ‘lattice’ was built before R 3.0.0: please re-install it
> ERROR: lazy loading failed for package ‘nlme’
> * removing ‘/home/john/R/i486-pc-linux-gnu-library/3.0/nlme’
>
> The downloaded source packages are in
>    ‘/tmp/Rtmpo7eFZf/downloaded_packages’
> Warning message:
> In install.packages("nlme") :
>  installation of package ‘nlme’ had non-zero exit status
>> library(nlme)
> Error: package ‘nlme’ was built before R 3.0.0: please re-install it
>
>
>
>
> John David Sorkin M.D., Ph.D.
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