[R] Problems downloading and installing nlme under Linux Mint 15

[John Sorkin]

Clint,
Thank you!
Problem solved.
John

 
John David Sorkin M.D., Ph.D.
Professor of Medicine
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology and
Geriatric Medicine
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing) 
>>> Clint Bowman <clint at ecy.wa.gov> 1/21/2014 6:57 PM >>>
There is the error message:

Error : package ‘lattice’ was built before R 3.0.0: please re-install
it

Perhaps the problem lies there.

Clint BowmanINTERNET:clint at ecy.wa.gov
Air Quality ModelerINTERNET:clint at math.utah.edu
Department of EcologyVOICE:(360) 407-6815
PO Box 47600FAX:(360) 407-7534
Olympia, WA 98504-7600

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On Tue, 21 Jan 2014, John Sorkin wrote:

> I am running R under Linux Mint 15 and trying to download and
install
> nlme. During the download I get an error message:
> Warning message:
> In install.packages("nlme") :
>  installation of package ‘nlme’ had non-zero exit status
>
> When I try to load the package, I get an error message
>> library(nlme)
> Error: package ‘nlme’ was built before R 3.0.0: please re-install it
> Why am I getting the error message, and what can I do to fix the
> problem? Please see output of R session below.
> Thank you,
> John
>
>
>> version
> platform       i486-pc-linux-gnu
> arch           i486
> os             linux-gnu
> system         i486, linux-gnu
> status
> major          3
> minor          0.1
> year           2013
> month          05
> day            16
> svn rev        62743
> language       R
> version.string R version 3.0.1 (2013-05-16)
> nickname       Good Sport
>
>
>> install.packages("nlme")
> Installing package into ‘/home/john/R/i486-pc-linux-gnu-library/3.0’
> (as ‘lib’ is unspecified)
> --- Please select a CRAN mirror for use in this session ---
> trying URL
>
'http://watson.nci.nih.gov/cran_mirror/src/contrib/nlme_3.1-113.tar.gz'
> Content type 'application/octet-stream' length 752188 bytes (734 Kb)
> opened URL
> ==================================================
> downloaded 734 Kb
>
> * installing *source* package ‘nlme’ ...
> ** package ‘nlme’ successfully unpacked and MD5 sums checked
> ** libs
> gfortran   -fpic  -O2 -pipe -g  -c chol.f -o chol.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c corStruct.c -o corStruct.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c gnls.c -o gnls.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c init.c -o init.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c matrix.c -o matrix.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c nlOptimizer.c -o nlOptimizer.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c nlme.c -o nlme.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c nlmefit.c -o nlmefit.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c nls.c -o nls.o
> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG    
-fvisibility=hidden
> -fpic  -O2 -pipe -g  -c pdMat.c -o pdMat.o
> gfortran   -fpic  -O2 -pipe -g  -c rs.f -o rs.o
> gcc -std=gnu99 -shared -o nlme.so chol.o corStruct.o gnls.o init.o
> matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o
-lgfortran
> -lm -lquadmath -L/usr/lib/R/lib -lR
> installing to /home/john/R/i486-pc-linux-gnu-library/3.0/nlme/libs
> ** R
> ** data
> *** moving datasets to lazyload DB
> ** inst
> ** byte-compile and prepare package for lazy loading
> Error : package ‘lattice’ was built before R 3.0.0: please re-install
it
> ERROR: lazy loading failed for package ‘nlme’
> * removing ‘/home/john/R/i486-pc-linux-gnu-library/3.0/nlme’
>
> The downloaded source packages are in
>    ‘/tmp/Rtmpo7eFZf/downloaded_packages’
> Warning message:
> In install.packages("nlme") :
>  installation of package ‘nlme’ had non-zero exit status
>> library(nlme)
> Error: package ‘nlme’ was built before R 3.0.0: please re-install it
>
>
>
>
> John David Sorkin M.D., Ph.D.
> Professor of Medicine
> Chief, Biostatistics and Informatics
> University of Maryland School of Medicine Division of Gerontology
and
> Geriatric Medicine
> Baltimore VA Medical Center
> 10 North Greene Street
> GRECC (BT/18/GR)
> Baltimore, MD 21201-1524
> (Phone) 410-605-7119
> (Fax) 410-605-7913 (Please call phone number above prior to faxing)
>
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