[R] read.alignment() crashes

Eric Hu Eric.Hu at gilead.com
Tue Mar 1 01:34:28 CET 2016

Hi, I am trying to read a fasta file with >15K alignedd sequences. However it crashes showing a runtime error. I have tried both R.3.2.3 and R.3.2.1 under windows 7. A smaller fasta file works perfectly fine in either case.

myseqs <- read.alignment("aligned_seqs.fasta",format="fasta")


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